Transcript: ENST00000601549.1 KCNN4-011

Description

potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4 [Source:HGNC Symbol;Acc:6293]

Gene Synonyms

IK1, IKCA1, KCA4, KCa3.1, SK4, hIKCa1, hKCa4, hSK4

Location

Chromosome 19: 44,271,604-44,276,279 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 2082 variant alleles and maps to 325 oligo probes.

Gene

This transcript is a product of gene ENSG00000104783.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262888.3	KCNN4-001	2240	427aa	ENSP00000262888.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12630	M0QZ70 M0R2E8 O15554	NM_002250.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000600909.1	KCNN4-013	1190	59aa	ENSP00000470339.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QZ70	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000598836.1	KCNN4-010	1003	165aa	ENSP00000471900.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QZ70	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000599720.1	KCNN4-007	983	57aa	ENSP00000472513.1	Nonsense mediated decay		M0R2F1	-	-
ENST00000600408.1	KCNN4-009	648	113aa	ENSP00000472510.1	Nonsense mediated decay		M0R2E8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000601549.1	KCNN4-011	1093	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000599107.1	KCNN4-008	687	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000597184.1	KCNN4-012	631	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,093 bps,

Version

ENST00000601549.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000463604 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000601549.1 KCNN4-011

Summary