Transcript: ENST00000262888.3 KCNN4-001

Description

potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4 [Source:HGNC Symbol;Acc:6293]

Gene Synonyms

IK1, IKCA1, KCA4, KCa3.1, SK4, hIKCa1, hKCa4, hSK4

Location

Chromosome 19: 44,270,685-44,285,409 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 20 domains and features, is associated with 7148 variant alleles and maps to 482 oligo probes.

Gene

This transcript is a product of gene ENSG00000104783.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262888.3	KCNN4-001	2240	427aa	ENSP00000262888.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12630	M0QZ70 M0R2E8 O15554	NM_002250.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000600909.1	KCNN4-013	1190	59aa	ENSP00000470339.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QZ70	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000598836.1	KCNN4-010	1003	165aa	ENSP00000471900.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QZ70	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000599720.1	KCNN4-007	983	57aa	ENSP00000472513.1	Nonsense mediated decay		M0R2F1	-	-
ENST00000600408.1	KCNN4-009	648	113aa	ENSP00000472510.1	Nonsense mediated decay		M0R2E8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000601549.1	KCNN4-011	1093	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000599107.1	KCNN4-008	687	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000597184.1	KCNN4-012	631	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 2,240 bps, Translation length: 427 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15554

CCDS

This transcript is a member of the Human CCDS set: CCDS12630

Version

ENST00000262888.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000463598 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000262888.3 KCNN4-001

Summary