Transcript: ENST00000520493.1 SQLE-005

Description

squalene epoxidase [Source:HGNC Symbol;Acc:11279]

Gene Synonyms

ERG1

Location

Chromosome 8: 126,023,187-126,030,349 forward strand.

About this transcript

This transcript has 2 exons, is associated with 2784 variant alleles and maps to 123 oligo probes.

Gene

This transcript is a product of gene ENSG00000104549.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000265896.5	SQLE-001	2961	574aa	ENSP00000265896.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47918	B4DHX0 H0YBN7 Q14534 Q9UNR6	NM_003129.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000523430.1	SQLE-002	1879	479aa	ENSP00000430331.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DHX0 E7EVQ6 H0YBN7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521232.1	SQLE-004	711	184aa	ENSP00000428239.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJH9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000518931.1	SQLE-008	554	163aa	ENSP00000429916.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YBN7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000518604.1	SQLE-006	743	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000520493.1	SQLE-005	737	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 737 bps,

Version

ENST00000520493.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000381366 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000520493.1 SQLE-005

Summary