Transcript: ENST00000265896.5 SQLE-001

Description

squalene epoxidase [Source:HGNC Symbol;Acc:11279]

Gene Synonyms

ERG1

Location

Chromosome 8: 126,010,748-126,034,525 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 21 domains and features, is associated with 10330 variant alleles and maps to 632 oligo probes.

Gene

This transcript is a product of gene ENSG00000104549.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000265896.5	SQLE-001	2961	574aa	ENSP00000265896.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47918	B4DHX0 H0YBN7 Q14534 Q9UNR6	NM_003129.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000523430.1	SQLE-002	1879	479aa	ENSP00000430331.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DHX0 E7EVQ6 H0YBN7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521232.1	SQLE-004	711	184aa	ENSP00000428239.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJH9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000518931.1	SQLE-008	554	163aa	ENSP00000429916.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YBN7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000518604.1	SQLE-006	743	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000520493.1	SQLE-005	737	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 2,961 bps, Translation length: 574 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q14534

CCDS

This transcript is a member of the Human CCDS set: CCDS47918

Version

ENST00000265896.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000381362 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000265896.5 SQLE-001

Summary