Transcript: ENST00000558855.1 VPS18-003

Description

vacuolar protein sorting 18 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:15972]

Gene Synonyms

KIAA1475, PEP3

Location

About this transcript

This transcript has 5 exons, is annotated with 2 domains and features, is associated with 2302 variant alleles and maps to 136 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000220509.5	VPS18-001	3895	973aa	ENSP00000220509.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10069	Q9P253	NM_020857.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558474.1	VPS18-004	873	121aa	ENSP00000453555.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YMC9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558855.1	VPS18-003	1050	130aa	ENSP00000453265.1	Nonsense mediated decay		H0YLM6	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,050 bps, Translation length: 130 residues

Version

ENST00000558855.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000418854 (version 1)