Transcript: ENST00000219548.4 STUB1-001

Description

STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:11427]

Gene Synonyms

CHIP, HSPABP2, NY-CO-7, SDCCAG7, UBOX1

Location

Chromosome 16: 730,276-732,799 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 23 domains and features, is associated with 2114 variant alleles and maps to 408 oligo probes.

Gene

This transcript is a product of gene ENSG00000103266.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000219548.4	STUB1-001	1472	303aa	ENSP00000219548.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10419	Q9UNE7	NM_005861.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000565677.1	STUB1-002	1560	231aa	ENSP00000457228.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UNE7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000564370.1	STUB1-008	875	231aa	ENSP00000456875.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UNE7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000567173.1	STUB1-004	743	213aa	ENSP00000456591.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BS86	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000564316.1	STUB1-011	729	157aa	ENSP00000457090.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000566408.1	STUB1-010	684	185aa	ENSP00000457583.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000565813.1	STUB1-012	337	24aa	ENSP00000476751.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000566181.2	STUB1-005	510	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000569248.1	STUB1-003	1853	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000563505.1	STUB1-007	894	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000567790.1	STUB1-006	428	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,472 bps, Translation length: 303 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UNE7

CCDS

This transcript is a member of the Human CCDS set: CCDS10419

Version

ENST00000219548.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000241618 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000219548.4 STUB1-001

Summary