Transcript: ENST00000562534.1 USB1-018

Description

U6 snRNA biogenesis 1 [Source:HGNC Symbol;Acc:25792]

Gene Synonyms

C16orf57, FLJ13154, HVSL1, Mpn1, PN, hUsb1

Location

Chromosome 16: 58,035,320-58,051,344 forward strand.

About this transcript

This transcript has 6 exons, is associated with 6749 variant alleles and maps to 148 oligo probes.

Gene

This transcript is a product of gene ENSG00000103005.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000219281.3	USB1-001	2282	265aa	ENSP00000219281.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10791	B4DDJ8 H3BNM8 Q9BQ65	NM_024598.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000563149.1	USB1-003	1751	163aa	ENSP00000454692.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BN52	NM_001204911.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423271.3	USB1-004	1217	186aa	ENSP00000409792.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55997	Q9BQ65	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539737.2	USB1-002	1212	247aa	ENSP00000446143.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55998	Q9BQ65	NM_001195302.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561743.1	USB1-012	1135	214aa	ENSP00000454928.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DDJ8 H3BNM8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561568.1	USB1-014	671	182aa	ENSP00000457322.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BTT8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000564387.1	USB1-015	558	95aa	ENSP00000457302.1	Nonsense mediated decay		H3BTS1	-	-
ENST00000565662.1	USB1-017	719	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000569252.1	USB1-016	573	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000562534.1	USB1-018	562	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000568848.1	USB1-009	548	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000563207.1	USB1-013	464	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000566082.1	USB1-005	3888	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000565151.1	USB1-011	886	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566292.1	USB1-010	575	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 562 bps,

Version

ENST00000562534.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000429977 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000562534.1 USB1-018

Summary