Transcript: ENST00000219252.5 POLR2C-001

Description

polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Source:HGNC Symbol;Acc:9189]

Gene Synonyms

RPB3, RPB31, hRPB33, hsRPB3

Location

Chromosome 16: 57,496,299-57,505,922 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 12 domains and features, is associated with 4474 variant alleles and maps to 637 oligo probes.

Gene

This transcript is a product of gene ENSG00000102978.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000219252.5	POLR2C-001	2057	275aa	ENSP00000219252.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10782	P19387 Q6FGR6	NM_032940.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562599.1	POLR2C-005	748	46aa	ENSP00000456367.1	Nonsense mediated decay		H3BRR2	-	-
ENST00000564651.1	POLR2C-008	720	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000567982.1	POLR2C-007	1135	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000563115.1	POLR2C-002	1062	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000562953.1	POLR2C-006	806	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564626.1	POLR2C-004	518	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000563589.1	POLR2C-003	458	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,057 bps, Translation length: 275 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P19387

CCDS

This transcript is a member of the Human CCDS set: CCDS10782

Version

ENST00000219252.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000257340 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000219252.5 POLR2C-001

Summary