Transcript: ENST00000217740.3 RNF125-001

Description

ring finger protein 125, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:21150]

Gene Synonyms

FLJ20456, TRAC-1, TRAC1

Location

About this transcript

This transcript has 6 exons, is annotated with 9 domains and features, is associated with 23922 variant alleles and maps to 422 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000217740.3	RNF125-001	6020	232aa	ENSP00000217740.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11902	Q96EQ8	NM_017831.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000580209.1	RNF125-002	416	40aa	ENSP00000463935.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000583384.1	RNF125-003	647	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000583814.1	RNF125-004	712	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000580863.1	RNF125-005	525	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 6,020 bps, Translation length: 232 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96EQ8

CCDS

This transcript is a member of the Human CCDS set: CCDS11902

Version

ENST00000217740.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000255354 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.