Transcript: ENST00000381944.3 SLC52A3-004

Description

solute carrier family 52 (riboflavin transporter), member 3 [Source:HGNC Symbol;Acc:16187]

Gene Synonyms

BVVLS, BVVLS1, C20orf54, RFT2, RFVT3, bA371L19.1, hRFT2

Location

About this transcript

This transcript has 4 exons, is annotated with 15 domains and features, is associated with 4222 variant alleles and maps to 357 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000217254.7	SLC52A3-001	2598	469aa	ENSP00000217254.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13007	K0A6P4 Q9NQ40	NM_033409.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381944.3	SLC52A3-004	3060	415aa	ENSP00000371370.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NQ40	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000473664.1	SLC52A3-002	957	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488495.1	SLC52A3-003	571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 3,060 bps, Translation length: 415 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NQ40

Version

ENST00000381944.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000077485 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.