Transcript: ENST00000496054.1 NFATC2-003

Description

nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 [Source:HGNC Symbol;Acc:7776]

Gene Synonyms

NF-ATP, NFAT1, NFATP, NFATp

Location

Chromosome 20: 50,007,946-50,015,756 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 4625 variant alleles and maps to 179 oligo probes.

Gene

This transcript is a product of gene ENSG00000101096.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396009.3	NFATC2-002	7437	925aa	ENSP00000379330.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13437	B5B2P3 B5B2P4 Q13469	NM_173091.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371564.3	NFATC2-001	7525	921aa	ENSP00000360619.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33488	B5B2P0 Q13469	NM_012340.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000609943.1	NFATC2-005	5690	905aa	ENSP00000477370.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS68157	B5B2P2 B5B2P4	NM_001258295.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000414705.1	NFATC2-004	2974	901aa	ENSP00000396471.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46614	B5B2P0 Q13469	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000610033.1	NFATC2-007	2740	702aa	ENSP00000477142.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS68156	B5B2P0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000609507.1	NFATC2-006	2662	702aa	ENSP00000477342.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS68156	B5B2P0	NM_001258294.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000496054.1	NFATC2-003	620	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 620 bps,

Version

ENST00000496054.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000258917 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000496054.1 NFATC2-003

Summary