Transcript: ENST00000556076.1 CHGA-004

Description

chromogranin A (parathyroid secretory protein 1) [Source:HGNC Symbol;Acc:1929]

Gene Synonyms

CGA

Location

Chromosome 14: 93,389,502-93,398,026 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 3685 variant alleles and maps to 173 oligo probes.

Gene

This transcript is a product of gene ENSG00000100604.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000216492.5	CHGA-001	2063	457aa	ENSP00000216492.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9906	P10645	NM_001275.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000334654.4	CHGA-003	1474	306aa	ENSP00000334023.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G5E968 Q86T07	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000556076.1	CHGA-004	896	38aa	ENSP00000450801.1	Nonsense mediated decay		G3V2Q7	-	-
ENST00000553866.1	CHGA-005	889	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000556876.1	CHGA-007	912	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000556098.1	CHGA-006	638	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 896 bps, Translation length: 38 residues

Version

ENST00000556076.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000412412 (version 1)

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Transcript: ENST00000556076.1 CHGA-004

Summary