Transcript: ENST00000216489.3 ALKBH1-001

Description

alkB, alkylation repair homolog 1 (E. coli) [Source:HGNC Symbol;Acc:17911]

Gene Synonyms

ABH, ABH1, ALKBH, alkB, hABH

Location

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features, is associated with 16389 variant alleles and maps to 442 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000216489.3	ALKBH1-001	2594	389aa	ENSP00000216489.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32127	Q13686	NM_006020.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000557057.1	ALKBH1-002	1750	116aa	ENSP00000451886.1	Nonsense mediated decay		G3V4M4 H0YJF3	-	-
ENST00000555100.1	ALKBH1-003	649	112aa	ENSP00000451386.1	Nonsense mediated decay		H0YJF3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000554097.1	ALKBH1-004	497	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,594 bps, Translation length: 389 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13686

CCDS

This transcript is a member of the Human CCDS set: CCDS32127

Version

ENST00000216489.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000414037 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.