Transcript: ENST00000216180.3 PNPLA3-001

Description

patatin-like phospholipase domain containing 3 [Source:HGNC Symbol;Acc:18590]

Gene Synonyms

ADPN, C22orf20, FLJ22012, adiponutrin, dJ796I17.1, iPLA(2)epsilon, iPLA2epsilon

Location

About this transcript

This transcript has 9 exons, is annotated with 4 domains and features, is associated with 11868 variant alleles and maps to 387 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000216180.3	PNPLA3-001	2805	481aa	ENSP00000216180.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14054	Q9NST1 U3N901	NM_025225.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423180.2	PNPLA3-002	2222	477aa	ENSP00000397987.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NST1 U3N901	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000406117.2	PNPLA3-005	1480	120aa	ENSP00000384668.2	Nonsense mediated decay		F8W8E5	-	-
ENST00000478713.1	PNPLA3-003	730	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497129.1	PNPLA3-004	422	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,805 bps, Translation length: 481 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NST1

CCDS

This transcript is a member of the Human CCDS set: CCDS14054

Version

ENST00000216180.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000318891 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.