Transcript: ENST00000472378.1 TSPO-003

Description

translocator protein (18kDa) [Source:HGNC Symbol;Acc:1158]

Gene Synonyms

BPBS, BZRP, DBI, IBP, MBR, PBR, PBRS, PBS, PKBS, PTBR, mDRC, pk18

Location

Chromosome 22: 43,547,579-43,555,678 forward strand.

About this transcript

This transcript has 2 exons, is associated with 3991 variant alleles and maps to 70 oligo probes.

Gene

This transcript is a product of gene ENSG00000100300.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000329563.4	TSPO-004	955	169aa	ENSP00000328973.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33661	B1AH87 J3QLD3 O76068 P30536	NM_001256531.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000337554.3	TSPO-001	881	169aa	ENSP00000338004.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33661	B1AH87 J3QLD3 O76068 P30536	NM_000714.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428336.1	TSPO-005	672	107aa	ENSP00000405685.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AH87	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000396265.3	TSPO-201	654	102aa	ENSP00000379563.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AH88	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000583777.1	TSPO-002	636	65aa	ENSP00000463495.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QLD3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000472378.1	TSPO-003	495	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 495 bps,

Version

ENST00000472378.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000319617 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000472378.1 TSPO-003

Summary