Transcript: ENST00000463455.1 RTCB-003

Description

RNA 2',3'-cyclic phosphate and 5'-OH ligase [Source:HGNC Symbol;Acc:26935]

Gene Synonyms

C22orf28, DJ149A16.6, FAAP, HSPC117, RP1-149A16.6

Location

Chromosome 22: 32,803,866-32,808,235 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 2184 variant alleles and maps to 243 oligo probes.

Gene

This transcript is a product of gene ENSG00000100220.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000216038.5	RTCB-001	2027	505aa	ENSP00000216038.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13905	Q9Y3I0	NM_014306.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000451746.2	RTCB-201	1188	175aa	ENSP00000413466.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EQS9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000476619.1	RTCB-006	594	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485373.1	RTCB-007	564	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487704.1	RTCB-004	767	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463455.1	RTCB-003	628	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000498434.1	RTCB-008	536	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 628 bps,

Version

ENST00000463455.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000128994 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000463455.1 RTCB-003

Summary