Transcript: ENST00000216038.5 RTCB-001

Description

RNA 2',3'-cyclic phosphate and 5'-OH ligase [Source:HGNC Symbol;Acc:26935]

Gene Synonyms

C22orf28, DJ149A16.6, FAAP, HSPC117, RP1-149A16.6

Location

Chromosome 22: 32,783,569-32,808,242 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 5 domains and features, is associated with 11255 variant alleles and maps to 661 oligo probes.

Gene

This transcript is a product of gene ENSG00000100220.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000216038.5	RTCB-001	2027	505aa	ENSP00000216038.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13905	Q9Y3I0	NM_014306.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000451746.2	RTCB-201	1188	175aa	ENSP00000413466.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EQS9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000476619.1	RTCB-006	594	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485373.1	RTCB-007	564	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487704.1	RTCB-004	767	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463455.1	RTCB-003	628	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000498434.1	RTCB-008	536	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 2,027 bps, Translation length: 505 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y3I0

CCDS

This transcript is a member of the Human CCDS set: CCDS13905

Version

ENST00000216038.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000075188 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000216038.5 RTCB-001

Summary