Transcript: ENST00000472374.2 CENPM-003

Description

centromere protein M [Source:HGNC Symbol;Acc:18352]

Gene Synonyms

C22orf18, CENP-M, ICEN39, MGC861, PANE1, Pane1, bK250D10.2

Location

Chromosome 22: 42,334,741-42,336,223 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 2 domains and features, is associated with 1244 variant alleles and maps to 204 oligo probes.

Gene

This transcript is a product of gene ENSG00000100162.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000215980.5	CENPM-001	966	180aa	ENSP00000215980.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14025	B1AHQ6 Q9NSP4	NM_024053.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000402338.1	CENPM-004	1002	146aa	ENSP00000384731.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AHQ6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000404067.1	CENPM-005	905	73aa	ENSP00000384814.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AHQ7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000407253.3	CENPM-008	818	107aa	ENSP00000384743.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46720	B1AHQ7 Q9NSP4	NM_001002876.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000402420.1	CENPM-002	688	125aa	ENSP00000384132.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AHQ8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000472374.2	CENPM-003	541	58aa	ENSP00000430624.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46719	Q9NSP4	NM_001110215.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396437.3	CENPM-010	689	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460824.1	CENPM-007	303	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 541 bps, Translation length: 58 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NSP4

CCDS

This transcript is a member of the Human CCDS set: CCDS46719

Version

ENST00000472374.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Stop codons

This transcript has a variant, rs5758511, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HAPMAP-TSI, CSHL-HAPMAP:HapMap-HCB, ESP6500:European_American, CSHL-HAPMAP:HAPMAP-GIH, CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HAPMAP-MEX, CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HAPMAP-CHB, CSHL-HAPMAP:HAPMAP-CHD.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000322060 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000472374.2 CENPM-003

Summary