Transcript: ENST00000404603.1 SNRPD3-005

Description

small nuclear ribonucleoprotein D3 polypeptide 18kDa [Source:HGNC Symbol;Acc:11160]

Gene Synonyms

SMD3, Sm-D3

Location

About this transcript

This transcript has 7 exons, is annotated with 7 domains and features, is associated with 26468 variant alleles and maps to 387 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000215829.3	SNRPD3-001	1763	126aa	ENSP00000215829.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13828	P62318	NM_004175.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000402849.1	SNRPD3-003	567	120aa	ENSP00000385266.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DJP7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000404603.1	SNRPD3-005	715	126aa	ENSP00000456090.1	Nonsense mediated decay	CCDS13828	P62318	-	-
ENST00000439775.1	SNRPD3-004	640	62aa	ENSP00000456969.1	Nonsense mediated decay		H3BT13	-	-
ENST00000468770.1	SNRPD3-002	544	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 3, Transcript length: 715 bps, Translation length: 126 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P62318

CCDS

This transcript is a member of the Human CCDS set: CCDS13828

Version

ENST00000404603.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000319817 (version 1)