Transcript: ENST00000519385.1 GABRP-003

Description

gamma-aminobutyric acid (GABA) A receptor, pi [Source:HGNC Symbol;Acc:4089]

Location

Chromosome 5: 170,210,729-170,239,502 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 21 domains and features, is associated with 13121 variant alleles and maps to 308 oligo probes.

Gene

This transcript is a product of gene ENSG00000094755.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000518525.1	GABRP-001	3576	440aa	ENSP00000430100.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4375	E5RG98 E5RGF7 E5RHF6 E5RHU0 E5RK74 O00591	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000265294.4	GABRP-201	3310	440aa	ENSP00000265294.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4375	E5RG98 E5RGF7 E5RHF6 E5RHU0 E5RK74 O00591	NM_014211.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000519385.1	GABRP-003	1567	289aa	ENSP00000430727.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KNX4 E5RG98 E5RGF7 E5RHF6 E5RHU0 E5RK74 E7EWG0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000519598.1	GABRP-002	1284	349aa	ENSP00000430772.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RG98 E5RGF7 E5RHF6 E5RHU0 E5RI57 E5RK74	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521481.1	GABRP-010	721	171aa	ENSP00000428804.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RG98 E5RHF6 E5RHU0 E5RK74	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000522868.1	GABRP-006	700	189aa	ENSP00000430188.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RG98 E5RGF7 E5RHF6 E5RHU0 E5RK74	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000519196.1	GABRP-009	689	59aa	ENSP00000429668.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RHF6 E5RHU0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000518122.1	GABRP-007	582	52aa	ENSP00000429815.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RHF6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000521009.1	GABRP-008	456	92aa	ENSP00000428103.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RHF6 E5RHU0 E5RK74	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000519137.1	GABRP-011	263	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 1,567 bps, Translation length: 289 residues

Version

ENST00000519385.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000371873 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000519385.1 GABRP-003

Summary