Transcript: ENST00000366935.3 GPATCH2-001

Description

G patch domain containing 2 [Source:HGNC Symbol;Acc:25499]

Gene Synonyms

CT110, FLJ10252, GPATC2, PPP1R30, RP11-361K17.1

Location

About this transcript

This transcript has 10 exons, is annotated with 10 domains and features, is associated with 85075 variant alleles and maps to 692 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000366935.3	GPATCH2-001	5851	528aa	ENSP00000355902.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1518	Q9NW75	NM_018040.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366934.3	GPATCH2-002	3218	376aa	ENSP00000355901.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NW75	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000489246.2	GPATCH2-004	715	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470014.2	GPATCH2-005	442	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485274.1	GPATCH2-003	343	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 5,851 bps, Translation length: 528 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NW75

CCDS

This transcript is a member of the Human CCDS set: CCDS1518

Version

ENST00000366935.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000001272 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.