Transcript: ENST00000559597.1 RCOR1-004

Description

REST corepressor 1 [Source:HGNC Symbol;Acc:17441]

Gene Synonyms

COREST, KIAA0071, RCOR

Location

About this transcript

This transcript has 2 exons, is associated with 290 variant alleles and maps to 82 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262241.6	RCOR1-001	5754	485aa	ENSP00000262241.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9974	J3KN32	NM_015156.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000570597.1	RCOR1-201	5518	482aa	ENSP00000459789.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UKL0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560472.1	RCOR1-003	411	35aa	ENSP00000454204.1	Nonsense mediated decay		H0YNY4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000559597.1	RCOR1-004	391	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558495.1	RCOR1-002	302	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 391 bps,

Version

ENST00000559597.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000415866 (version 1)