Transcript: ENST00000338244.1 SLC23A2-002

Description

solute carrier family 23 (ascorbic acid transporter), member 2 [Source:HGNC Symbol;Acc:10973]

Gene Synonyms

KIAA0238, NBTL1, SLC23A1, SVCT2, YSPL2

Location

Chromosome 20: 4,833,002-4,982,145 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 16 domains and features, is associated with 63436 variant alleles and maps to 795 oligo probes.

Gene

This transcript is a product of gene ENSG00000089057.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000379333.1	SLC23A2-001	6962	650aa	ENSP00000368637.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13085	Q4ZGM1 Q9UGH3	NM_203327.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000338244.1	SLC23A2-002	6944	650aa	ENSP00000344322.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13085	Q4ZGM1 Q9UGH3	NM_005116.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424750.2	SLC23A2-201	2375	536aa	ENSP00000406601.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DJZ1 Q4ZGM1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423430.1	SLC23A2-004	911	304aa	ENSP00000396364.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000468355.1	SLC23A2-003	1934	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496331.1	SLC23A2-005	761	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 15, Transcript length: 6,944 bps, Translation length: 650 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UGH3

CCDS

This transcript is a member of the Human CCDS set: CCDS13085

Version

ENST00000338244.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000077833 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000338244.1 SLC23A2-002

Summary