Transcript: ENST00000278795.3 SMOX-011

Description

spermine oxidase [Source:HGNC Symbol;Acc:15862]

Gene Synonyms

C20orf16, FLJ20746, MGC1010, PAO, PAO-1, PAOH1, PAOh1, SMO, dJ779E11.1

Location

Chromosome 20: 4,129,426-4,168,394 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 11 domains and features, is associated with 17001 variant alleles and maps to 544 oligo probes.

Gene

This transcript is a product of gene ENSG00000088826.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000305958.4	SMOX-005	2233	555aa	ENSP00000307252.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13075	Q9NWM0	NM_175839.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379460.2	SMOX-008	2230	555aa	ENSP00000368773.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13075	Q9NWM0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000278795.3	SMOX-011	2164	532aa	ENSP00000278795.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13078	Q9NWM0	NM_175842.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000339123.6	SMOX-001	2074	502aa	ENSP00000344595.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13076	Q9NWM0	NM_175840.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457205.1	SMOX-004	1669	442aa	ENSP00000407269.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5TE25	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000346595.2	SMOX-010	982	190aa	ENSP00000341775.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13077	Q9NWM0	NM_175841.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000484515.1	SMOX-009	900	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494098.1	SMOX-007	812	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486998.1	SMOX-002	702	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493223.1	SMOX-006	280	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466004.1	SMOX-003	215	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000602910.1	SMOX-012	2193	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 2,164 bps, Translation length: 532 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NWM0

CCDS

This transcript is a member of the Human CCDS set: CCDS13078

Version

ENST00000278795.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000252865 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000278795.3 SMOX-011

Summary