Transcript: ENST00000200457.4 TRIP6-001

Description

thyroid hormone receptor interactor 6 [Source:HGNC Symbol;Acc:12311]

Gene Synonyms

MGC10556, MGC10558, MGC29959, MGC3837, MGC4423, OIP-1, OIP1, TRIP-6, TRIP6i2, ZRP-1, hsa-mir-6875

Location

Chromosome 7: 100,464,760-100,471,076 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 25 domains and features, is associated with 3704 variant alleles and maps to 530 oligo probes.

Gene

This transcript is a product of gene ENSG00000087077.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000200457.4	TRIP6-001	1942	476aa	ENSP00000200457.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5708	Q15654 Q71V88	NM_003302.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429658.1	TRIP6-009	646	215aa	ENSP00000389194.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000417475.1	TRIP6-003	992	106aa	ENSP00000413817.1	Nonsense mediated decay		Q15654	-	-
ENST00000437505.1	TRIP6-007	875	80aa	ENSP00000410736.1	Nonsense mediated decay		Q15654	-	-
ENST00000476870.1	TRIP6-004	1750	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463125.1	TRIP6-008	835	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000488670.1	TRIP6-010	615	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000496260.1	TRIP6-006	451	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,942 bps, Translation length: 476 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15654

CCDS

This transcript is a member of the Human CCDS set: CCDS5708

Version

ENST00000200457.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000347151 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000200457.4 TRIP6-001

Summary