Transcript: ENST00000380822.4 TAF9-001

Description

TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa [Source:HGNC Symbol;Acc:11542]

Gene Synonyms

AD-004, CGI-137, CINAP, CIP, MGC1603, MGC3647, MGC5067, MGC:5067, STAF31/32, TAF2G, TAFII-31, TAFII-32, TAFII31, TAFII32, TAFIID32, hCINAP

Location

Chromosome 5: 68,646,811-68,665,369 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 6 domains and features, is associated with 8529 variant alleles and maps to 310 oligo probes.

Gene

This transcript is a product of gene ENSG00000085231.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000328663.4	TAF9-201	1461	264aa	ENSP00000370193.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4002	D6RGK3 D6RHW1 D6RIE8 D6RIV9 D6RIY1 Q16594	NM_001015892.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380822.4	TAF9-001	1648	172aa	ENSP00000370201.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4001	Q9Y3D8	NM_016283.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000506736.1	TAF9-003	1331	264aa	ENSP00000421873.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4002	D6RGK3 D6RHW1 D6RIE8 D6RIV9 D6RIY1 Q16594	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000217893.5	TAF9-002	1283	264aa	ENSP00000217893.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4002	D6RGK3 D6RHW1 D6RIE8 D6RIV9 D6RIY1 Q16594	NM_003187.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380818.3	TAF9-004	1183	169aa	ENSP00000370197.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43324	Q9Y3D8	NM_001015891.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000503245.1	TAF9-009	966	197aa	ENSP00000425944.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RGK3 D6RHW1 D6RIE8 D6RIV9 D6RIY1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000509462.1	TAF9-006	761	166aa	ENSP00000427343.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RGK3 D6RHW1 D6RIV9 D6RIY1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000508954.1	TAF9-007	754	102aa	ENSP00000427617.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RHW1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000504109.1	TAF9-008	588	135aa	ENSP00000426283.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RGK3 D6RHW1 D6RIY1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000512561.1	TAF9-011	587	141aa	ENSP00000420947.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RDH4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000512152.1	TAF9-005	582	127aa	ENSP00000425798.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RHW1 D6RIY1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000502819.1	TAF9-010	743	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,648 bps, Translation length: 172 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y3D8

CCDS

This transcript is a member of the Human CCDS set: CCDS4001

Version

ENST00000380822.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000216793 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000380822.4 TAF9-001

Summary