Transcript: ENST00000472290.1 GCKR-002

Description

glucokinase (hexokinase 4) regulator [Source:HGNC Symbol;Acc:4196]

Gene Synonyms

FGQTL5, GKRP

Location

Chromosome 2: 27,719,750-27,729,758 forward strand.

About this transcript

This transcript has 11 exons, is associated with 4533 variant alleles and maps to 319 oligo probes.

Gene

This transcript is a product of gene ENSG00000084734.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264717.2	GCKR-001	2186	625aa	ENSP00000264717.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1757	F5H1P6 Q14397	NM_001486.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424318.2	GCKR-201	2116	435aa	ENSP00000409109.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H1P6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000411584.1	GCKR-006	789	189aa	ENSP00000416917.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000453813.1	GCKR-004	701	227aa	ENSP00000399463.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C1B4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000417872.1	GCKR-003	568	150aa	ENSP00000398303.1	Nonsense mediated decay		B4DPQ2	-	-
ENST00000472290.1	GCKR-002	1302	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478147.1	GCKR-005	579	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 0, Transcript length: 1,302 bps,

Version

ENST00000472290.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000324524 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000472290.1 GCKR-002

Summary