Transcript: ENST00000477384.2 EPHA6-004

Description

EPH receptor A6 [Source:HGNC Symbol;Acc:19296]

Gene Synonyms

EHK-2, EHK2, EK12, EPA6, FLJ35246, HEK12, PRO57066

Location

Chromosome 3: 97,158,454-97,466,375 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 18 domains and features, is associated with 135004 variant alleles and maps to 324 oligo probes.

Gene

This transcript is a product of gene ENSG00000080224.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000389672.5	EPHA6-002	3971	1130aa	ENSP00000374323.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46876	H0Y8K5	NM_001080448.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000470610.2	EPHA6-001	2058	547aa	ENSP00000420598.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EU71	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000514100.1	EPHA6-007	1682	398aa	ENSP00000421711.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63697	D6RAL5	NM_001278300.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000502694.1	EPHA6-006	1582	334aa	ENSP00000423950.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54616	Q9UF33	NM_173655.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000442602.2	EPHA6-201	1144	241aa	ENSP00000403100.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DXQ6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542517.1	EPHA6-202	1082	285aa	ENSP00000439758.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0Z8	NM_001278301.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000506569.1	EPHA6-005	1078	324aa	ENSP00000425132.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0Z8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477384.2	EPHA6-004	1690	373aa	ENSP00000419470.2	Nonsense mediated decay		J3KR66	-	-
ENST00000503760.1	EPHA6-003	1413	208aa	ENSP00000421260.1	Nonsense mediated decay		B4DXM2	-	-
ENST00000508345.1	EPHA6-008	1189	241aa	ENSP00000424638.1	Nonsense mediated decay		B4DXQ6	-	-
ENST00000506349.1	EPHA6-009	681	55aa	ENSP00000421353.1	Nonsense mediated decay		H0Y8K5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 13, Coding exons: 9, Transcript length: 1,690 bps, Translation length: 373 residues

Version

ENST00000477384.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000359272 (version 3)

Favourite species

All species

Recent locations

Transcript: ENST00000477384.2 EPHA6-004

Summary