Transcript: ENST00000476458.1 LRRC16A-003

Description

leucine rich repeat containing 16A [Source:HGNC Symbol;Acc:21581]

Gene Synonyms

CARMIL, CARMIL1, CARMIL1a, FLJ20048, LRRC16, dJ501N12.1, dJ501N12.5

Location

About this transcript

This transcript has 3 exons, is associated with 3758 variant alleles and maps to 226 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000329474.6	LRRC16A-001	5431	1371aa	ENSP00000331983.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54973	Q5VZK9	NM_017640.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000377969.3	LRRC16A-201	1163	176aa	ENSP00000367206.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VZK9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000476458.1	LRRC16A-003	1291	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461945.1	LRRC16A-005	1290	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497227.1	LRRC16A-002	707	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,291 bps,

Version

ENST00000476458.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000040047 (version 1)