Transcript: ENST00000329474.6 LRRC16A-001

Description

leucine rich repeat containing 16A [Source:HGNC Symbol;Acc:21581]

Gene Synonyms

CARMIL, CARMIL1, CARMIL1a, FLJ20048, LRRC16, dJ501N12.1, dJ501N12.5

Location

About this transcript

This transcript has 37 exons, is annotated with 23 domains and features, is associated with 133224 variant alleles and maps to 1082 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000329474.6	LRRC16A-001	5431	1371aa	ENSP00000331983.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54973	Q5VZK9	NM_017640.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000377969.3	LRRC16A-201	1163	176aa	ENSP00000367206.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VZK9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000476458.1	LRRC16A-003	1291	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461945.1	LRRC16A-005	1290	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497227.1	LRRC16A-002	707	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 37, Coding exons: 37, Transcript length: 5,431 bps, Translation length: 1,371 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5VZK9

CCDS

This transcript is a member of the Human CCDS set: CCDS54973

Version

ENST00000329474.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000040045 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.