Transcript: ENST00000549595.1 SENP1-003

Description

SUMO1/sentrin specific peptidase 1 [Source:HGNC Symbol;Acc:17927]

Gene Synonyms

SuPr-2

Location

Chromosome 12: 48,439,105-48,495,255 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 16 domains and features, is associated with 23900 variant alleles and maps to 376 oligo probes.

Gene

This transcript is a product of gene ENSG00000079387.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000004980.5	SENP1-201	4838	644aa	ENSP00000004980.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44868	F8VRZ8 Q9P0U3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000339976.6	SENP1-202	4969	162aa	ENSP00000344652.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W0I8 Q6N001	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000448372.1	SENP1-203	4726	643aa	ENSP00000394791.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VRZ8 Q9P0U3	NM_001267595.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000551330.1	SENP1-002	4088	644aa	ENSP00000446681.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44868	F8VRZ8 Q9P0U3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549518.1	SENP1-004	2260	644aa	ENSP00000447328.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44868	F8VRZ8 Q9P0U3	NM_001267594.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549595.1	SENP1-003	1932	643aa	ENSP00000450076.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VRZ8 Q9P0U3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000551798.1	SENP1-006	562	142aa	ENSP00000448597.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VRZ8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000552189.1	SENP1-001	4967	130aa	ENSP00000447593.1	Nonsense mediated decay		F8W0I8	-	-
ENST00000547886.1	SENP1-009	965	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000551592.1	SENP1-010	866	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000547181.1	SENP1-007	691	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000549882.1	SENP1-005	475	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551358.1	SENP1-008	452	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 1,932 bps, Translation length: 643 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9P0U3

Version

ENST00000549595.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000406470 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000549595.1 SENP1-003

Summary