Transcript: ENST00000520952.1 CDH17-005

Description

cadherin 17, LI cadherin (liver-intestine) [Source:HGNC Symbol;Acc:1756]

Gene Synonyms

CDH16, HPT-1, HPT1, cadherin

Location

Chromosome 8: 95,158,197-95,174,356 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 6860 variant alleles and maps to 115 oligo probes.

Gene

This transcript is a product of gene ENSG00000079112.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000027335.3	CDH17-001	3693	832aa	ENSP00000027335.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6260	E5RJT3 Q12864	NM_004063.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450165.2	CDH17-003	2625	832aa	ENSP00000401468.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6260	E5RJT3 Q12864	NM_001144663.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000441892.2	CDH17-002	2204	580aa	ENSP00000392811.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EN24	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521491.1	CDH17-004	637	147aa	ENSP00000428189.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJT3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000520952.1	CDH17-005	565	90aa	ENSP00000429730.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 565 bps, Translation length: 90 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000520952.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000378563 (version 1)

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Transcript: ENST00000520952.1 CDH17-005

Summary