Transcript: ENST00000450165.2 CDH17-003

Description

cadherin 17, LI cadherin (liver-intestine) [Source:HGNC Symbol;Acc:1756]

Gene Synonyms

CDH16, HPT-1, HPT1, cadherin

Location

Chromosome 8: 95,140,468-95,229,531 reverse strand.

About this transcript

This transcript has 18 exons, is annotated with 47 domains and features, is associated with 38752 variant alleles and maps to 636 oligo probes.

Gene

This transcript is a product of gene ENSG00000079112.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000027335.3	CDH17-001	3693	832aa	ENSP00000027335.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6260	E5RJT3 Q12864	NM_004063.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450165.2	CDH17-003	2625	832aa	ENSP00000401468.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6260	E5RJT3 Q12864	NM_001144663.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000441892.2	CDH17-002	2204	580aa	ENSP00000392811.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EN24	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521491.1	CDH17-004	637	147aa	ENSP00000428189.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJT3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000520952.1	CDH17-005	565	90aa	ENSP00000429730.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 18, Coding exons: 17, Transcript length: 2,625 bps, Translation length: 832 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q12864

CCDS

This transcript is a member of the Human CCDS set: CCDS6260

Version

ENST00000450165.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000378562 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000450165.2 CDH17-003

Summary