Transcript: ENST00000541771.1 TNRC6C-203

Description

trinucleotide repeat containing 6C [Source:HGNC Symbol;Acc:29318]

Gene Synonyms

FLJ20015, KIAA1582

Location

Chromosome 17: 76,044,994-76,101,021 forward strand.

About this transcript

This transcript has 18 exons, is annotated with 36 domains and features, is associated with 24333 variant alleles and maps to 533 oligo probes.

Gene

This transcript is a product of gene ENSG00000078687.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000335749.4	TNRC6C-202	9740	1726aa	ENSP00000336783.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45799	G3XAB8 K7EKN9 K7ELY5	NM_001142640.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000301624.4	TNRC6C-201	9632	1690aa	ENSP00000301624.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45798	K7EKN9 K7ELY5 Q9HCJ0	NM_018996.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588847.1	TNRC6C-001	8527	1726aa	ENSP00000467154.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45799	G3XAB8 K7EKN9 K7ELY5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588061.1	TNRC6C-002	8419	1690aa	ENSP00000468647.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45798	K7EKN9 K7ELY5 Q9HCJ0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541771.1	TNRC6C-203	5318	1690aa	ENSP00000440310.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45798	K7EKN9 K7ELY5 Q9HCJ0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544502.1	TNRC6C-204	5276	1726aa	ENSP00000442421.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45799	G3XAB8 K7EKN9 K7ELY5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000585438.1	TNRC6C-007	682	116aa	ENSP00000466277.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ELY5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000588549.1	TNRC6C-004	576	95aa	ENSP00000465707.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKN9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000591851.1	TNRC6C-003	1642	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000592251.1	TNRC6C-008	608	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000587990.1	TNRC6C-009	600	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000592566.1	TNRC6C-006	544	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 5,318 bps, Translation length: 1,690 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9HCJ0

CCDS

This transcript is a member of the Human CCDS set: CCDS45798

Version

ENST00000541771.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000541771.1 TNRC6C-203

Summary