Transcript: ENST00000593523.1 EXOSC5-002

Description

exosome component 5 [Source:HGNC Symbol;Acc:24662]

Gene Synonyms

CML28, MGC12901, RRP41B, RRP46, Rrp46p, hRrp46p, p12B

Location

Chromosome 19: 41,897,442-41,903,261 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 2760 variant alleles and maps to 114 oligo probes.

Gene

This transcript is a product of gene ENSG00000077348.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000221233.4	EXOSC5-001	1118	235aa	ENSP00000221233.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12580	Q9NQT4	NM_020158.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000596905.1	EXOSC5-005	826	197aa	ENSP00000471002.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R050	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000593771.1	EXOSC5-004	404	133aa	ENSP00000471557.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R102	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000602129.1	EXOSC5-003	354	62aa	ENSP00000472396.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R289	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000593523.1	EXOSC5-002	716	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 716 bps,

Version

ENST00000593523.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000463495 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000593523.1 EXOSC5-002

Summary