Transcript: ENST00000243563.3 SNRPA-001

Description

small nuclear ribonucleoprotein polypeptide A [Source:HGNC Symbol;Acc:11151]

Gene Synonyms

Mud1, U1-A, U1A

Location

Chromosome 19: 41,256,764-41,271,294 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 14 domains and features, is associated with 7398 variant alleles and maps to 422 oligo probes.

Gene

This transcript is a product of gene ENSG00000077312.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000243563.3	SNRPA-001	1621	282aa	ENSP00000243563.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12565	M0QZG7 M0R221 M0R2B8 P09012	NM_004596.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000601393.1	SNRPA-006	969	256aa	ENSP00000472355.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R268	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000601545.1	SNRPA-003	695	184aa	ENSP00000470534.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QZG7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000599362.1	SNRPA-009	555	142aa	ENSP00000472258.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R221	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000597353.1	SNRPA-011	538	148aa	ENSP00000472449.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R221 M0R2B8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000601253.1	SNRPA-008	519	128aa	ENSP00000469224.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QXK2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000600456.1	SNRPA-005	592	87aa	ENSP00000471230.1	Nonsense mediated decay		M0R0G9	-	-
ENST00000599570.1	SNRPA-007	925	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000598923.1	SNRPA-010	952	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000598452.1	SNRPA-004	679	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000596860.1	SNRPA-012	336	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,621 bps, Translation length: 282 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P09012

CCDS

This transcript is a member of the Human CCDS set: CCDS12565

Version

ENST00000243563.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000463118 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000243563.3 SNRPA-001

Summary