Transcript: ENST00000477276.2 PTPN23-008

Description

protein tyrosine phosphatase, non-receptor type 23 [Source:HGNC Symbol;Acc:14406]

Gene Synonyms

DKFZP564F0923, HD-PTP, HDPTP, KIAA1471, PTP-TD14

Location

Chromosome 3: 47,446,770-47,448,240 forward strand.

About this transcript

This transcript has 5 exons, is associated with 769 variant alleles and maps to 162 oligo probes.

Gene

This transcript is a product of gene ENSG00000076201.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000265562.4	PTPN23-001	5244	1636aa	ENSP00000265562.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2754	B4DST5 Q9H3S7	NM_015466.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000431726.1	PTPN23-201	5119	1510aa	ENSP00000387825.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DST5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456221.1	PTPN23-006	592	169aa	ENSP00000396328.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JD91	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000602307.1	PTPN23-003	5119	64aa	ENSP00000473266.1	Nonsense mediated decay		R4GMM7	-	-
ENST00000477276.2	PTPN23-008	882	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000495653.1	PTPN23-009	676	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000462998.1	PTPN23-007	260	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 882 bps,

Version

ENST00000477276.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000345134 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000477276.2 PTPN23-008

Summary