Transcript: ENST00000188312.2 ACTR6-001

Description

ARP6 actin-related protein 6 homolog (yeast) [Source:HGNC Symbol;Acc:24025]

Gene Synonyms

ARP6, FLJ13433, HSPC281, MSTP136, hARP6, hARPX

Location

Chromosome 12: 100,593,865-100,618,201 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 9 domains and features, is associated with 9652 variant alleles and maps to 439 oligo probes.

Gene

This transcript is a product of gene ENSG00000075089.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000188312.2	ACTR6-001	2464	396aa	ENSP00000188312.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9074	G3V1Y1 Q7Z4D2 Q9GZN1	NM_022496.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546902.1	ACTR6-003	1877	314aa	ENSP00000448669.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V1Y1 Q7Z4D2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000551617.1	ACTR6-004	1715	294aa	ENSP00000448356.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VSD1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000552376.1	ACTR6-005	1659	376aa	ENSP00000447237.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VSD1 F8W057	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000551652.1	ACTR6-013	582	192aa	ENSP00000448508.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VRL1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000553038.1	ACTR6-002	2045	127aa	ENSP00000447641.1	Nonsense mediated decay		B4DLG9 F8W043	-	-
ENST00000548180.1	ACTR6-006	1747	88aa	ENSP00000450330.1	Nonsense mediated decay		F8VP72	-	-
ENST00000552064.1	ACTR6-008	780	88aa	ENSP00000448447.1	Nonsense mediated decay		F8VP72	-	-
ENST00000547458.1	ACTR6-010	595	144aa	ENSP00000447565.1	Nonsense mediated decay		F8W043 F8W0Q1	-	-
ENST00000550813.1	ACTR6-012	351	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000551440.1	ACTR6-009	628	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551517.1	ACTR6-011	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000549977.1	ACTR6-007	549	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 2,464 bps, Translation length: 396 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9GZN1

CCDS

This transcript is a member of the Human CCDS set: CCDS9074

Version

ENST00000188312.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000408159 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000188312.2 ACTR6-001

Summary