Transcript: ENST00000604689.1 TUBE1-011

Description

tubulin, epsilon 1 [Source:HGNC Symbol;Acc:20775]

Gene Synonyms

FLJ22589, TUBE, dJ142L7.2

Location

Chromosome 6: 112,396,288-112,399,897 reverse strand.

About this transcript

This transcript has 1 exon, is associated with 1498 variant alleles and maps to 136 oligo probes.

Gene

This transcript is a product of gene ENSG00000074935.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000368662.5	TUBE1-001	2142	475aa	ENSP00000357651.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5100	Q9UJT0	NM_016262.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000605457.1	TUBE1-006	1645	220aa	ENSP00000474458.1	Nonsense mediated decay		S4R3K3	-	-
ENST00000604743.1	TUBE1-007	959	53aa	ENSP00000475087.1	Nonsense mediated decay		-	-	-
ENST00000604967.1	TUBE1-005	582	54aa	ENSP00000474989.1	Nonsense mediated decay		S4R424	-	-
ENST00000604814.1	TUBE1-004	1784	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000441191.1	TUBE1-003	625	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000604689.1	TUBE1-011	3610	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000368657.3	TUBE1-002	726	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000603722.1	TUBE1-008	613	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000603651.1	TUBE1-010	559	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000603621.1	TUBE1-009	547	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 1, Coding exons: 0, Transcript length: 3,610 bps,

Version

ENST00000604689.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000469612 (version 1)

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Transcript: ENST00000604689.1 TUBE1-011

Summary