Transcript: ENST00000251047.5 LMAN1-001

Description

lectin, mannose-binding, 1 [Source:HGNC Symbol;Acc:6631]

Gene Synonyms

ERGIC-53, ERGIC53, F5F8D, FMFD1, MCFD1, MR60, gp58

Location

About this transcript

This transcript has 13 exons, is annotated with 11 domains and features, is associated with 14108 variant alleles and maps to 696 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000251047.5	LMAN1-001	5521	510aa	ENSP00000251047.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11974	P49257	NM_005570.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000587940.1	LMAN1-002	442	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000587561.1	LMAN1-005	1181	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000587918.1	LMAN1-003	678	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000592562.1	LMAN1-004	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 5,521 bps, Translation length: 510 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P49257

CCDS

This transcript is a member of the Human CCDS set: CCDS11974

Version

ENST00000251047.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000256129 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.