Transcript: ENST00000559627.1 PTGS2-004

Description

prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) [Source:HGNC Symbol;Acc:9605]

Gene Synonyms

COX-2, COX2, GRIPGHS, PGG/HS, PGHS-2, PHS-2, hCox-2

Location

About this transcript

This transcript has 10 exons, is annotated with 9 domains and features, is associated with 2864 variant alleles and maps to 293 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000367468.5	PTGS2-001	4514	604aa	ENSP00000356438.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1371	D9MWI3 P35354	NM_000963.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000559627.1	PTGS2-004	1705	163aa	ENSP00000454130.1	Nonsense mediated decay		D9MWI3 Q6ZYK7	-	-
ENST00000490885.2	PTGS2-002	3690	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466691.1	PTGS2-003	888	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000559800.1	PTGS2-005	577	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 5, Transcript length: 1,705 bps, Translation length: 163 residues

Version

ENST00000559627.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000418775 (version 1)