Transcript: ENST00000263817.6 ABCB11-001

Description

ATP-binding cassette, sub-family B (MDR/TAP), member 11 [Source:HGNC Symbol;Acc:42]

Gene Synonyms

ABC16, BRIC2, BSEP, PFIC-2, PFIC2, PGY4, SPGP

Location

About this transcript

This transcript has 28 exons, is annotated with 35 domains and features, is associated with 47549 variant alleles and maps to 803 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263817.6	ABCB11-001	4775	1321aa	ENSP00000263817.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46444	B4DYQ0 O95342 Q53S60 Q9UIL3	NM_003742.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000439188.1	ABCB11-003	2822	72aa	ENSP00000416058.1	Nonsense mediated decay		H7C486	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000478354.1	ABCB11-004	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 28, Coding exons: 27, Transcript length: 4,775 bps, Translation length: 1,321 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O95342

CCDS

This transcript is a member of the Human CCDS set: CCDS46444

Version

ENST00000263817.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000333616 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.