Description
protein tyrosine phosphatase, non-receptor type 18 (brain-derived) [Source:HGNC Symbol;Acc:9649]
Gene Synonyms
BDP1, PTP-HSCF
Location
Chromosome 2: 131,116,466-131,128,000 forward strand.
About this transcript
This transcript has 4 exons, is associated with 5278 variant alleles and maps to 263 oligo probes.
Gene
This transcript is a product of gene ENSG00000072135.8 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000175756.5 | PTPN18-001 | 3669 | 460aa | ENSP00000175756.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2161 | B4DNE5 Q99952 | NM_014369.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000347849.3 | PTPN18-002 | 2472 | 353aa | ENSP00000310092.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS46410 | B4DNE5 Q7Z637 Q99952 | NM_001142370.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000409022.2 | PTPN18-003 | 993 | 269aa | ENSP00000387031.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4DNE5 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000428843.1 | PTPN18-006 | 785 | 48aa | ENSP00000411750.1 | Nonsense mediated decay | F8WBM9 | - | - | |
| ENST00000420717.1 | PTPN18-013 | 599 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000462321.1 | PTPN18-004 | 1717 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000481492.1 | PTPN18-012 | 1394 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000490812.1 | PTPN18-010 | 833 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000462996.1 | PTPN18-011 | 759 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000483617.1 | PTPN18-007 | 595 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000495400.1 | PTPN18-009 | 552 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000479295.1 | PTPN18-014 | 513 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000489215.1 | PTPN18-005 | 460 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000490137.1 | PTPN18-016 | 411 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000460992.1 | PTPN18-008 | 398 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000464576.1 | PTPN18-015 | 393 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |