Transcript: ENST00000553816.1 RDH11-012

Description

retinol dehydrogenase 11 (all-trans/9-cis/11-cis) [Source:HGNC Symbol;Acc:17964]

Gene Synonyms

ARSDR1, CGI82, HCBP12, MDT1, PSDR1, RALR1, SCALD, SDR7C1

Location

Chromosome 14: 68,151,227-68,162,434 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 4765 variant alleles and maps to 196 oligo probes.

Gene

This transcript is a product of gene ENSG00000072042.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000381346.4	RDH11-001	2588	318aa	ENSP00000370750.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32104	B3KQ19 Q0QD40 Q8TC12	NM_016026.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000553384.1	RDH11-003	1926	305aa	ENSP00000452079.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KQ19 Q8TC12	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428130.2	RDH11-004	1064	248aa	ENSP00000416395.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58326	Q8TC12	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554035.1	RDH11-013	849	204aa	ENSP00000450802.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YJ46	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000557726.1	RDH11-010	621	186aa	ENSP00000450435.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V234	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000557273.1	RDH11-011	562	178aa	ENSP00000450651.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2G6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554731.1	RDH11-009	888	61aa	ENSP00000451280.1	Nonsense mediated decay		G3V3K0	-	-
ENST00000557331.1	RDH11-008	553	62aa	ENSP00000452108.1	Nonsense mediated decay		G3V510	-	-
ENST00000553578.1	RDH11-006	4035	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000553816.1	RDH11-012	1163	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000556692.1	RDH11-007	801	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,163 bps,

Version

ENST00000553816.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000412494 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000553816.1 RDH11-012

Summary