Transcript: ENST00000349769.3 CPSF1-001

Description

cleavage and polyadenylation specific factor 1, 160kDa [Source:HGNC Symbol;Acc:2324]

Gene Synonyms

CPSF160, HSU37012, MIRN1234, MIRN939, P/cl.18, hsa-mir-1234, hsa-mir-6849, hsa-mir-939

Location

Chromosome 8: 145,618,450-145,634,753 reverse strand.

About this transcript

This transcript has 38 exons, is annotated with 6 domains and features, is associated with 12609 variant alleles and maps to 1060 oligo probes.

Gene

This transcript is a product of gene ENSG00000071894.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000349769.3	CPSF1-001	4510	1443aa	ENSP00000339353.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34966	D3DWL9 E9PIM1 Q10570 Q9C0J6	NM_013291.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000531042.1	CPSF1-002	654	174aa	ENSP00000435761.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PIM1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000531727.1	CPSF1-012	704	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000532935.1	CPSF1-013	506	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000531683.1	CPSF1-003	1033	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000531480.1	CPSF1-010	789	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000532560.1	CPSF1-006	701	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000526271.1	CPSF1-005	697	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000527827.1	CPSF1-009	619	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000532725.1	CPSF1-004	597	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000529288.1	CPSF1-007	588	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000533492.1	CPSF1-008	510	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000527916.1	CPSF1-011	506	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 38, Coding exons: 37, Transcript length: 4,510 bps, Translation length: 1,443 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q10570

CCDS

This transcript is a member of the Human CCDS set: CCDS34966

Version

ENST00000349769.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000382422 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000349769.3 CPSF1-001

Summary