Transcript: ENST00000562367.1 CSNK2A2-004

Description

casein kinase 2, alpha prime polypeptide [Source:HGNC Symbol;Acc:2459]

Gene Synonyms

CK2A2, CSNK2A1

Location

Chromosome 16: 58,207,922-58,230,677 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 9670 variant alleles and maps to 92 oligo probes.

Gene

This transcript is a product of gene ENSG00000070770.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262506.3	CSNK2A2-001	1701	350aa	ENSP00000262506.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10794	H3BNI9 P19784	NM_001896.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000563307.1	CSNK2A2-002	4978	152aa	ENSP00000457911.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000567730.2	CSNK2A2-005	947	230aa	ENSP00000456606.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BSA1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000565188.1	CSNK2A2-006	547	135aa	ENSP00000454874.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BNI9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000566813.1	CSNK2A2-003	1569	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000562367.1	CSNK2A2-004	687	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 687 bps,

Version

ENST00000562367.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000422599 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000562367.1 CSNK2A2-004

Summary