Transcript: ENST00000374720.3 SLC44A1-003

Description

solute carrier family 44 (choline transporter), member 1 [Source:HGNC Symbol;Acc:18798]

Gene Synonyms

CD92, CDW92, CHTL1, CTL1, RP11-287A8.1

Location

Chromosome 9: 108,006,903-108,159,627 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 15 domains and features, is associated with 62894 variant alleles and maps to 951 oligo probes.

Gene

This transcript is a product of gene ENSG00000070214.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000374720.3	SLC44A1-003	10511	657aa	ENSP00000363852.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6763	B3KMS7 Q8WWI5	NM_080546.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374723.1	SLC44A1-001	9640	652aa	ENSP00000363855.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8WWI5	NM_001286730.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374724.1	SLC44A1-004	3088	654aa	ENSP00000363856.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H9KV47 Q8WWI5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000343170.7	SLC44A1-201	2407	446aa	ENSP00000341856.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H9KV47	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000470972.1	SLC44A1-002	10433	657aa	ENSP00000433072.1	Nonsense mediated decay	CCDS6763	B3KMS7 Q8WWI5	-	-
ENST00000607692.1	SLC44A1-007	586	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000436716.1	SLC44A1-006	576	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000607701.1	SLC44A1-005	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 10,511 bps, Translation length: 657 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8WWI5

CCDS

This transcript is a member of the Human CCDS set: CCDS6763

Version

ENST00000374720.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000053500 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000374720.3 SLC44A1-003

Summary