Transcript: ENST00000502612.1 NEDD4-009

Description

neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:7727]

Gene Synonyms

KIAA0093, MGC176705, NEDD4-1, RPF1

Location

Chromosome 15: 56,152,913-56,285,746 reverse strand.

About this transcript

This transcript has 9 exons, is associated with 60020 variant alleles and maps to 242 oligo probes.

Gene

This transcript is a product of gene ENSG00000069869.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000338963.2	NEDD4-001	7019	1247aa	ENSP00000345530.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10156	P46934	NM_198400.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000508342.1	NEDD4-002	7235	1319aa	ENSP00000424827.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS61644	P46934	NM_001284338.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000506154.1	NEDD4-003	6751	1303aa	ENSP00000422705.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS61643	P46934	NM_001284339.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435532.3	NEDD4-006	5869	900aa	ENSP00000410613.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45265	P46934	NM_006154.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000508871.1	NEDD4-004	5707	910aa	ENSP00000422455.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	NM_001284340.1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000503468.1	NEDD4-005	6339	401aa	ENSP00000426051.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000502612.1	NEDD4-009	652	39aa	ENSP00000424471.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000507063.1	NEDD4-007	457	35aa	ENSP00000421047.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000508075.1	NEDD4-010	965	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000514893.1	NEDD4-011	577	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000557845.1	NEDD4-012	374	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000513957.1	NEDD4-008	591	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 3, Transcript length: 652 bps, Translation length: 39 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000502612.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000359824 (version 1)

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Transcript: ENST00000502612.1 NEDD4-009

Summary