Transcript: ENST00000403534.3 BCL3-003

Description

B-cell CLL/lymphoma 3 [Source:HGNC Symbol;Acc:998]

Gene Synonyms

BCL4, D19S37, hsa-mir-8085

Location

Chromosome 19: 45,250,962-45,262,743 forward strand.

About this transcript

This transcript has 8 exons, is associated with 5796 variant alleles and maps to 574 oligo probes.

Gene

This transcript is a product of gene ENSG00000069399.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000164227.5	BCL3-001	2038	454aa	ENSP00000164227.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12642	P20749	NM_005178.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000444487.1	BCL3-005	923	308aa	ENSP00000393731.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000487394.1	BCL3-002	603	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000473468.1	BCL3-004	587	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000403534.3	BCL3-003	1714	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474300.1	BCL3-006	819	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473473.1	BCL3-008	445	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000464319.1	BCL3-007	439	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000477832.1	BCL3-009	385	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 0, Transcript length: 1,714 bps,

Version

ENST00000403534.3

Type

Retained intron

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000322978 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000403534.3 BCL3-003

Summary