Transcript: ENST00000435939.2 CYFIP1-004

Description

cytoplasmic FMR1 interacting protein 1 [Source:HGNC Symbol;Acc:13759]

Gene Synonyms

KIAA0068, P140SRA-1, SHYC, SRA-1, SRA1

Location

Chromosome 15: 22,955,755-23,005,943 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 10 domains and features, is associated with 27753 variant alleles and maps to 528 oligo probes.

Gene

This transcript is a product of gene ENSG00000068793.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000313077.7	CYFIP1-001	6863	1253aa	ENSP00000324549.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10009	H0YL39 H0YLJ5 Q7L576	NM_014608.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435939.2	CYFIP1-004	5674	822aa	ENSP00000405956.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45189	Q7L576	NM_001033028.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560848.1	CYFIP1-003	4515	1253aa	ENSP00000454199.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10009	H0YL39 H0YLJ5 Q7L576	NM_001287810.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561263.2	CYFIP1-015	707	176aa	ENSP00000453060.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YL50	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000561274.1	CYFIP1-007	582	151aa	ENSP00000453233.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YLJ5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000557859.1	CYFIP1-010	553	185aa	ENSP00000453917.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000561185.1	CYFIP1-006	544	161aa	ENSP00000453046.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YL39 H0YLJ5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000558549.1	CYFIP1-011	583	45aa	ENSP00000454045.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000558430.1	CYFIP1-008	575	77aa	ENSP00000454091.1	Nonsense mediated decay		H0YNP0	-	-
ENST00000561020.1	CYFIP1-005	3471	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558826.1	CYFIP1-012	929	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000559393.1	CYFIP1-009	585	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561296.1	CYFIP1-013	512	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557890.1	CYFIP1-014	408	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 5,674 bps, Translation length: 822 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7L576

CCDS

This transcript is a member of the Human CCDS set: CCDS45189

Version

ENST00000435939.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000415634 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000435939.2 CYFIP1-004

Summary